| @@ -29,15 +29,15 @@ def spkernel(*args, | |||||
| n_jobs=None, | n_jobs=None, | ||||
| chunksize=None, | chunksize=None, | ||||
| verbose=True): | verbose=True): | ||||
| """Calculate shortest-path kernels between graphs. | |||||
| """Compute shortest-path kernels between graphs. | |||||
| Parameters | Parameters | ||||
| ---------- | ---------- | ||||
| Gn : List of NetworkX graph | Gn : List of NetworkX graph | ||||
| List of graphs between which the kernels are calculated. | |||||
| List of graphs between which the kernels are computed. | |||||
| G1, G2 : NetworkX graphs | G1, G2 : NetworkX graphs | ||||
| Two graphs between which the kernel is calculated. | |||||
| Two graphs between which the kernel is computed. | |||||
| node_label : string | node_label : string | ||||
| Node attribute used as label. The default node label is atom. | Node attribute used as label. The default node label is atom. | ||||
| @@ -179,7 +179,7 @@ def spkernel(*args, | |||||
| # do_partial = partial(spkernel_do, Gn, ds_attrs, node_label, node_kernels) | # do_partial = partial(spkernel_do, Gn, ds_attrs, node_label, node_kernels) | ||||
| # itr = combinations_with_replacement(range(0, len(Gn)), 2) | # itr = combinations_with_replacement(range(0, len(Gn)), 2) | ||||
| # for i, j, kernel in tqdm( | # for i, j, kernel in tqdm( | ||||
| # pool.map(do_partial, itr), desc='calculating kernels', | |||||
| # pool.map(do_partial, itr), desc='Computing kernels', | |||||
| # file=sys.stdout): | # file=sys.stdout): | ||||
| # Kmatrix[i][j] = kernel | # Kmatrix[i][j] = kernel | ||||
| # Kmatrix[j][i] = kernel | # Kmatrix[j][i] = kernel | ||||
| @@ -202,7 +202,7 @@ def spkernel(*args, | |||||
| # # ---- direct running, normally use single CPU core. ---- | # # ---- direct running, normally use single CPU core. ---- | ||||
| # from itertools import combinations_with_replacement | # from itertools import combinations_with_replacement | ||||
| # itr = combinations_with_replacement(range(0, len(Gn)), 2) | # itr = combinations_with_replacement(range(0, len(Gn)), 2) | ||||
| # for i, j in tqdm(itr, desc='calculating kernels', file=sys.stdout): | |||||
| # for i, j in tqdm(itr, desc='Computing kernels', file=sys.stdout): | |||||
| # kernel = spkernel_do(Gn[i], Gn[j], ds_attrs, node_label, node_kernels) | # kernel = spkernel_do(Gn[i], Gn[j], ds_attrs, node_label, node_kernels) | ||||
| # Kmatrix[i][j] = kernel | # Kmatrix[i][j] = kernel | ||||
| # Kmatrix[j][i] = kernel | # Kmatrix[j][i] = kernel | ||||