| @@ -65,10 +65,10 @@ The docs of the library can be found [here](https://graphkit-learn.readthedocs.i | |||||
| ### 1 List of graph kernels | ### 1 List of graph kernels | ||||
| * Based on walks | * Based on walks | ||||
| * [The common walk kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/common_walk.py) [1] | |||||
| * [The common walk kernel](gklearn/kernels/common_walk.py) [1] | |||||
| * Exponential | * Exponential | ||||
| * Geometric | * Geometric | ||||
| * [The marginalized kenrel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/marginalized.py) | |||||
| * [The marginalized kenrel](gklearn/kernels/marginalized.py) | |||||
| * With tottering [2] | * With tottering [2] | ||||
| * Without tottering [7] | * Without tottering [7] | ||||
| * [The generalized random walk kernel](gklearn/kernels/random_walk.py) [3] | * [The generalized random walk kernel](gklearn/kernels/random_walk.py) [3] | ||||
| @@ -77,15 +77,15 @@ The docs of the library can be found [here](https://graphkit-learn.readthedocs.i | |||||
| * Fixed-point iterations | * Fixed-point iterations | ||||
| * [Spectral decomposition](gklearn/kernels/spectral_decomposition.py) | * [Spectral decomposition](gklearn/kernels/spectral_decomposition.py) | ||||
| * Based on paths | * Based on paths | ||||
| * [The shortest path kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/shortest_path.py) [4] | |||||
| * [The structural shortest path kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/structural_sp.py) [5] | |||||
| * [The path kernel up to length h](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/path_up_to_h.py) [6] | |||||
| * [The shortest path kernel](gklearn/kernels/shortest_path.py) [4] | |||||
| * [The structural shortest path kernel](gklearn/kernels/structural_sp.py) [5] | |||||
| * [The path kernel up to length h](gklearn/kernels/path_up_to_h.py) [6] | |||||
| * The Tanimoto kernel | * The Tanimoto kernel | ||||
| * The MinMax kernel | * The MinMax kernel | ||||
| * Non-linear kernels | * Non-linear kernels | ||||
| * [The treelet kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/treelet.py) [10] | |||||
| * [Weisfeiler-Lehman kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/weisfeiler_lehman.py) [11] | |||||
| * [Subtree](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/weisfeiler_lehman.py#L479) | |||||
| * [The treelet kernel](gklearn/kernels/treelet.py) [10] | |||||
| * [Weisfeiler-Lehman kernel](gklearn/kernels/weisfeiler_lehman.py) [11] | |||||
| * [Subtree](gklearn/kernels/weisfeiler_lehman.py#L479) | |||||
| A demo of computing graph kernels can be found on [Google Colab](https://colab.research.google.com/drive/17Q2QCl9CAtDweGF8LiWnWoN2laeJqT0u?usp=sharing) and in the [`examples`](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/examples/compute_graph_kernel.py) folder. | A demo of computing graph kernels can be found on [Google Colab](https://colab.research.google.com/drive/17Q2QCl9CAtDweGF8LiWnWoN2laeJqT0u?usp=sharing) and in the [`examples`](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/examples/compute_graph_kernel.py) folder. | ||||
| @@ -97,7 +97,7 @@ A demo of generating graph preimages can be found on [Google Colab](https://cola | |||||
| ### 4 Interface to `GEDLIB` | ### 4 Interface to `GEDLIB` | ||||
| [`GEDLIB`](https://github.com/dbblumenthal/gedlib) is an easily extensible C++ library for (suboptimally) computing the graph edit distance between attributed graphs. [A Python interface](https://github.com/jajupmochi/graphkit-learn/tree/master/gklearn/gedlib) for `GEDLIB` is integrated in this library, based on [`gedlibpy`](https://github.com/Ryurin/gedlibpy) library. | |||||
| [`GEDLIB`](https://github.com/dbblumenthal/gedlib) is an easily extensible C++ library for (suboptimally) computing the graph edit distance between attributed graphs. [A Python interface](gklearn/gedlib) for `GEDLIB` is integrated in this library, based on [`gedlibpy`](https://github.com/Ryurin/gedlibpy) library. | |||||
| ### 5 Computation optimization methods | ### 5 Computation optimization methods | ||||