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ModelScope/docker/scripts/install_unifold.sh

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  1. apt-get update && apt-get install -y  hmmer kalign curl cmake \

  2.         && apt-get clean && rm -rf /var/lib/apt/lists/* \

  3.         && git clone --branch v3.3.0 https://github.com/soedinglab/hh-suite.git /tmp/hh-suite \

  4.         && mkdir /tmp/hh-suite/build \

  5.         && pushd /tmp/hh-suite/build \

  6.         && cmake -DCMAKE_INSTALL_PREFIX=/opt/hhsuite .. \

  7.         && make -j 4 && make install \

  8.         && ln -s /opt/hhsuite/bin/* /usr/bin \

  9.         && popd \

  10.         && rm -rf /tmp/hh-suite \

  11.         && pip install --no-cache-dir unicore -f https://modelscope.oss-cn-beijing.aliyuncs.com/releases/repo.html \

  12.         && pip install --no-cache-dir  biopython ipdb