fastNLP/fastNLP/models/bert.py

"""
bert.py is modified from huggingface/pytorch-pretrained-BERT, which is licensed under the Apache License 2.0.

"""
import copy
import json
import math
import os

import torch
from torch import nn

CONFIG_FILE = 'bert_config.json'
MODEL_WEIGHTS = 'pytorch_model.bin'


def gelu(x):
    return x * 0.5 * (1.0 + torch.erf(x / math.sqrt(2.0)))


def swish(x):
    return x * torch.sigmoid(x)


ACT2FN = {"gelu": gelu, "relu": torch.nn.functional.relu, "swish": swish}


class BertLayerNorm(nn.Module):
    def __init__(self, hidden_size, eps=1e-12):
        super(BertLayerNorm, self).__init__()
        self.weight = nn.Parameter(torch.ones(hidden_size))
        self.bias = nn.Parameter(torch.zeros(hidden_size))
        self.variance_epsilon = eps

    def forward(self, x):
        u = x.mean(-1, keepdim=True)
        s = (x - u).pow(2).mean(-1, keepdim=True)
        x = (x - u) / torch.sqrt(s + self.variance_epsilon)
        return self.weight * x + self.bias


class BertEmbeddings(nn.Module):
    def __init__(self, vocab_size, hidden_size, max_position_embeddings, type_vocab_size, hidden_dropout_prob):
        super(BertEmbeddings, self).__init__()
        self.word_embeddings = nn.Embedding(vocab_size, hidden_size)
        self.position_embeddings = nn.Embedding(max_position_embeddings, hidden_size)
        self.token_type_embeddings = nn.Embedding(type_vocab_size, hidden_size)

        # self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
        # any TensorFlow checkpoint file
        self.LayerNorm = BertLayerNorm(hidden_size, eps=1e-12)
        self.dropout = nn.Dropout(hidden_dropout_prob)

    def forward(self, input_ids, token_type_ids=None):
        seq_length = input_ids.size(1)
        position_ids = torch.arange(seq_length, dtype=torch.long, device=input_ids.device)
        position_ids = position_ids.unsqueeze(0).expand_as(input_ids)
        if token_type_ids is None:
            token_type_ids = torch.zeros_like(input_ids)

        words_embeddings = self.word_embeddings(input_ids)
        position_embeddings = self.position_embeddings(position_ids)
        token_type_embeddings = self.token_type_embeddings(token_type_ids)

        embeddings = words_embeddings + position_embeddings + token_type_embeddings
        embeddings = self.LayerNorm(embeddings)
        embeddings = self.dropout(embeddings)
        return embeddings


class BertSelfAttention(nn.Module):
    def __init__(self, hidden_size, num_attention_heads, attention_probs_dropout_prob):
        super(BertSelfAttention, self).__init__()
        if hidden_size % num_attention_heads != 0:
            raise ValueError(
                "The hidden size (%d) is not a multiple of the number of attention "
                "heads (%d)" % (hidden_size, num_attention_heads))
        self.num_attention_heads = num_attention_heads
        self.attention_head_size = int(hidden_size / num_attention_heads)
        self.all_head_size = self.num_attention_heads * self.attention_head_size

        self.query = nn.Linear(hidden_size, self.all_head_size)
        self.key = nn.Linear(hidden_size, self.all_head_size)
        self.value = nn.Linear(hidden_size, self.all_head_size)

        self.dropout = nn.Dropout(attention_probs_dropout_prob)

    def transpose_for_scores(self, x):
        new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
        x = x.view(*new_x_shape)
        return x.permute(0, 2, 1, 3)

    def forward(self, hidden_states, attention_mask):
        mixed_query_layer = self.query(hidden_states)
        mixed_key_layer = self.key(hidden_states)
        mixed_value_layer = self.value(hidden_states)

        query_layer = self.transpose_for_scores(mixed_query_layer)
        key_layer = self.transpose_for_scores(mixed_key_layer)
        value_layer = self.transpose_for_scores(mixed_value_layer)

        # Take the dot product between "query" and "key" to get the raw attention scores.
        attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
        attention_scores = attention_scores / math.sqrt(self.attention_head_size)
        # Apply the attention mask is (precomputed for all layers in BertModel forward() function)
        attention_scores = attention_scores + attention_mask

        # Normalize the attention scores to probabilities.
        attention_probs = nn.Softmax(dim=-1)(attention_scores)

        # This is actually dropping out entire tokens to attend to, which might
        # seem a bit unusual, but is taken from the original Transformer paper.
        attention_probs = self.dropout(attention_probs)

        context_layer = torch.matmul(attention_probs, value_layer)
        context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
        new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
        context_layer = context_layer.view(*new_context_layer_shape)
        return context_layer


class BertSelfOutput(nn.Module):
    def __init__(self, hidden_size, hidden_dropout_prob):
        super(BertSelfOutput, self).__init__()
        self.dense = nn.Linear(hidden_size, hidden_size)
        self.LayerNorm = BertLayerNorm(hidden_size, eps=1e-12)
        self.dropout = nn.Dropout(hidden_dropout_prob)

    def forward(self, hidden_states, input_tensor):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.dropout(hidden_states)
        hidden_states = self.LayerNorm(hidden_states + input_tensor)
        return hidden_states


class BertAttention(nn.Module):
    def __init__(self, hidden_size, num_attention_heads, attention_probs_dropout_prob, hidden_dropout_prob):
        super(BertAttention, self).__init__()
        self.self = BertSelfAttention(hidden_size, num_attention_heads, attention_probs_dropout_prob)
        self.output = BertSelfOutput(hidden_size, hidden_dropout_prob)

    def forward(self, input_tensor, attention_mask):
        self_output = self.self(input_tensor, attention_mask)
        attention_output = self.output(self_output, input_tensor)
        return attention_output


class BertIntermediate(nn.Module):
    def __init__(self, hidden_size, intermediate_size, hidden_act):
        super(BertIntermediate, self).__init__()
        self.dense = nn.Linear(hidden_size, intermediate_size)
        self.intermediate_act_fn = ACT2FN[hidden_act] \
            if isinstance(hidden_act, str) else hidden_act

    def forward(self, hidden_states):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.intermediate_act_fn(hidden_states)
        return hidden_states


class BertOutput(nn.Module):
    def __init__(self, hidden_size, intermediate_size, hidden_dropout_prob):
        super(BertOutput, self).__init__()
        self.dense = nn.Linear(intermediate_size, hidden_size)
        self.LayerNorm = BertLayerNorm(hidden_size, eps=1e-12)
        self.dropout = nn.Dropout(hidden_dropout_prob)

    def forward(self, hidden_states, input_tensor):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.dropout(hidden_states)
        hidden_states = self.LayerNorm(hidden_states + input_tensor)
        return hidden_states


class BertLayer(nn.Module):
    def __init__(self, hidden_size, num_attention_heads, attention_probs_dropout_prob, hidden_dropout_prob,
                 intermediate_size, hidden_act):
        super(BertLayer, self).__init__()
        self.attention = BertAttention(hidden_size, num_attention_heads, attention_probs_dropout_prob,
                                       hidden_dropout_prob)
        self.intermediate = BertIntermediate(hidden_size, intermediate_size, hidden_act)
        self.output = BertOutput(hidden_size, intermediate_size, hidden_dropout_prob)

    def forward(self, hidden_states, attention_mask):
        attention_output = self.attention(hidden_states, attention_mask)
        intermediate_output = self.intermediate(attention_output)
        layer_output = self.output(intermediate_output, attention_output)
        return layer_output


class BertEncoder(nn.Module):
    def __init__(self, num_hidden_layers, hidden_size, num_attention_heads, attention_probs_dropout_prob,
                 hidden_dropout_prob,
                 intermediate_size, hidden_act):
        super(BertEncoder, self).__init__()
        layer = BertLayer(hidden_size, num_attention_heads, attention_probs_dropout_prob, hidden_dropout_prob,
                          intermediate_size, hidden_act)
        self.layer = nn.ModuleList([copy.deepcopy(layer) for _ in range(num_hidden_layers)])

    def forward(self, hidden_states, attention_mask, output_all_encoded_layers=True):
        all_encoder_layers = []
        for layer_module in self.layer:
            hidden_states = layer_module(hidden_states, attention_mask)
            if output_all_encoded_layers:
                all_encoder_layers.append(hidden_states)
        if not output_all_encoded_layers:
            all_encoder_layers.append(hidden_states)
        return all_encoder_layers


class BertPooler(nn.Module):
    def __init__(self, hidden_size):
        super(BertPooler, self).__init__()
        self.dense = nn.Linear(hidden_size, hidden_size)
        self.activation = nn.Tanh()

    def forward(self, hidden_states):
        # We "pool" the model by simply taking the hidden state corresponding
        # to the first token.
        first_token_tensor = hidden_states[:, 0]
        pooled_output = self.dense(first_token_tensor)
        pooled_output = self.activation(pooled_output)
        return pooled_output


class BertModel(nn.Module):
    """Bidirectional Embedding Representations from Transformers.

    If you want to use pre-trained weights, please download from the following sources provided by pytorch-pretrained-BERT.
    sources::

    'bert-base-uncased': "https://s3.amazonaws.com/models.huggingface.co/bert/bert-base-uncased.tar.gz",
    'bert-large-uncased': "https://s3.amazonaws.com/models.huggingface.co/bert/bert-large-uncased.tar.gz",
    'bert-base-cased': "https://s3.amazonaws.com/models.huggingface.co/bert/bert-base-cased.tar.gz",
    'bert-large-cased': "https://s3.amazonaws.com/models.huggingface.co/bert/bert-large-cased.tar.gz",
    'bert-base-multilingual-uncased': "https://s3.amazonaws.com/models.huggingface.co/bert/bert-base-multilingual-uncased.tar.gz",
    'bert-base-multilingual-cased': "https://s3.amazonaws.com/models.huggingface.co/bert/bert-base-multilingual-cased.tar.gz",
    'bert-base-chinese': "https://s3.amazonaws.com/models.huggingface.co/bert/bert-base-chinese.tar.gz",


    Construct a BERT model with pre-trained weights::

        model = BertModel.from_pretrained("path/to/weights/directory")

    """

    def __init__(self, vocab_size,
                 hidden_size=768,
                 num_hidden_layers=12,
                 num_attention_heads=12,
                 intermediate_size=3072,
                 hidden_act="gelu",
                 hidden_dropout_prob=0.1,
                 attention_probs_dropout_prob=0.1,
                 max_position_embeddings=512,
                 type_vocab_size=2,
                 initializer_range=0.02, **kwargs):
        super(BertModel, self).__init__()
        self.embeddings = BertEmbeddings(vocab_size, hidden_size, max_position_embeddings,
                                         type_vocab_size, hidden_dropout_prob)
        self.encoder = BertEncoder(num_hidden_layers, hidden_size, num_attention_heads,
                                   attention_probs_dropout_prob, hidden_dropout_prob, intermediate_size,
                                   hidden_act)
        self.pooler = BertPooler(hidden_size)
        self.initializer_range = initializer_range

        self.apply(self.init_bert_weights)

    def init_bert_weights(self, module):
        if isinstance(module, (nn.Linear, nn.Embedding)):
            # Slightly different from the TF version which uses truncated_normal for initialization
            # cf https://github.com/pytorch/pytorch/pull/5617
            module.weight.data.normal_(mean=0.0, std=self.initializer_range)
        elif isinstance(module, BertLayerNorm):
            module.bias.data.zero_()
            module.weight.data.fill_(1.0)
        if isinstance(module, nn.Linear) and module.bias is not None:
            module.bias.data.zero_()

    def forward(self, input_ids, token_type_ids=None, attention_mask=None, output_all_encoded_layers=True):
        if attention_mask is None:
            attention_mask = torch.ones_like(input_ids)
        if token_type_ids is None:
            token_type_ids = torch.zeros_like(input_ids)

        # We create a 3D attention mask from a 2D tensor mask.
        # Sizes are [batch_size, 1, 1, to_seq_length]
        # So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
        # this attention mask is more simple than the triangular masking of causal attention
        # used in OpenAI GPT, we just need to prepare the broadcast dimension here.
        extended_attention_mask = attention_mask.unsqueeze(1).unsqueeze(2)

        # Since attention_mask is 1.0 for positions we want to attend and 0.0 for
        # masked positions, this operation will create a tensor which is 0.0 for
        # positions we want to attend and -10000.0 for masked positions.
        # Since we are adding it to the raw scores before the softmax, this is
        # effectively the same as removing these entirely.
        extended_attention_mask = extended_attention_mask.to(dtype=next(self.parameters()).dtype)  # fp16 compatibility
        extended_attention_mask = (1.0 - extended_attention_mask) * -10000.0

        embedding_output = self.embeddings(input_ids, token_type_ids)
        encoded_layers = self.encoder(embedding_output,
                                      extended_attention_mask,
                                      output_all_encoded_layers=output_all_encoded_layers)
        sequence_output = encoded_layers[-1]
        pooled_output = self.pooler(sequence_output)
        if not output_all_encoded_layers:
            encoded_layers = encoded_layers[-1]
        return encoded_layers, pooled_output

    @classmethod
    def from_pretrained(cls, pretrained_model_dir, state_dict=None, *inputs, **kwargs):
        # Load config
        config_file = os.path.join(pretrained_model_dir, CONFIG_FILE)
        config = json.load(open(config_file, "r"))
        # config = BertConfig.from_json_file(config_file)
        # logger.info("Model config {}".format(config))
        # Instantiate model.
        model = cls(*inputs, **config, **kwargs)
        if state_dict is None:
            weights_path = os.path.join(pretrained_model_dir, MODEL_WEIGHTS)
            state_dict = torch.load(weights_path)

        old_keys = []
        new_keys = []
        for key in state_dict.keys():
            new_key = None
            if 'gamma' in key:
                new_key = key.replace('gamma', 'weight')
            if 'beta' in key:
                new_key = key.replace('beta', 'bias')
            if new_key:
                old_keys.append(key)
                new_keys.append(new_key)
        for old_key, new_key in zip(old_keys, new_keys):
            state_dict[new_key] = state_dict.pop(old_key)

        missing_keys = []
        unexpected_keys = []
        error_msgs = []
        # copy state_dict so _load_from_state_dict can modify it
        metadata = getattr(state_dict, '_metadata', None)
        state_dict = state_dict.copy()
        if metadata is not None:
            state_dict._metadata = metadata

        def load(module, prefix=''):
            local_metadata = {} if metadata is None else metadata.get(prefix[:-1], {})
            module._load_from_state_dict(
                state_dict, prefix, local_metadata, True, missing_keys, unexpected_keys, error_msgs)
            for name, child in module._modules.items():
                if child is not None:
                    load(child, prefix + name + '.')

        load(model, prefix='' if hasattr(model, 'bert') else 'bert.')
        if len(missing_keys) > 0:
            print("Weights of {} not initialized from pretrained model: {}".format(
                model.__class__.__name__, missing_keys))
        if len(unexpected_keys) > 0:
            print("Weights from pretrained model not used in {}: {}".format(
                model.__class__.__name__, unexpected_keys))
        return model