add accuracy in POS Tester;

optimize evaluation output in Trainer;
keep POS pipeline (loader + trainer + tester + saver) OK;
add codes borrowed from FudanParser.

.idea/deployment.xml

@@ -0,0 +1,15 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="PublishConfigData" autoUpload="Always" serverName="zyfeng@10.40.40.86:22">
+    <serverData>
+      <paths name="zyfeng@10.40.40.86:22">
+        <serverdata>
+          <mappings>
+            <mapping deploy="/home/zyfeng/Desktop/fastNLP" local="$PROJECT_DIR$" />
+          </mappings>
+        </serverdata>
+      </paths>
+    </serverData>
+    <option name="myAutoUpload" value="ALWAYS" />
+  </component>
+</project>

.idea/fastNLP.iml

@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="PYTHON_MODULE" version="4">
+  <component name="NewModuleRootManager">
+    <content url="file://$MODULE_DIR$" />
+    <orderEntry type="jdk" jdkName="Remote Python 3.6.6 (sftp://zyfeng@10.40.40.86:22/home/zyfeng/miniconda3/envs/fastnlp/bin/python3.6)" jdkType="Python SDK" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+  <component name="PyDocumentationSettings">
+    <option name="renderExternalDocumentation" value="true" />
+  </component>
+  <component name="TestRunnerService">
+    <option name="PROJECT_TEST_RUNNER" value="Unittests" />
+  </component>
+</module>

.idea/inspectionProfiles/Project_Default.xml

@@ -0,0 +1,16 @@
+<component name="InspectionProjectProfileManager">
+  <profile version="1.0">
+    <option name="myName" value="Project Default" />
+    <inspection_tool class="PyPackageRequirementsInspection" enabled="true" level="WARNING" enabled_by_default="true">
+      <option name="ignoredPackages">
+        <value>
+          <list size="3">
+            <item index="0" class="java.lang.String" itemvalue="torch" />
+            <item index="1" class="java.lang.String" itemvalue="numpy" />
+            <item index="2" class="java.lang.String" itemvalue="torchvision" />
+          </list>
+        </value>
+      </option>
+    </inspection_tool>
+  </profile>
+</component>

.idea/misc.xml

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="JavaScriptSettings">
+    <option name="languageLevel" value="ES6" />
+  </component>
+  <component name="ProjectRootManager" version="2" project-jdk-name="Remote Python 3.6.6 (sftp://zyfeng@10.40.40.86:22/home/zyfeng/miniconda3/envs/fastnlp/bin/python3.6)" project-jdk-type="Python SDK" />
+</project>

.idea/modules.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/fastNLP.iml" filepath="$PROJECT_DIR$/.idea/fastNLP.iml" />
+    </modules>
+  </component>
+</project>

.idea/other.xml

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="PySciProjectComponent">
+    <option name="PY_SCI_VIEW" value="true" />
+    <option name="PY_SCI_VIEW_SUGGESTED" value="true" />
+  </component>
+</project>

.idea/vcs.xml

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="VcsDirectoryMappings">
+    <mapping directory="$PROJECT_DIR$" vcs="Git" />
+  </component>
+</project>

fastNLP/action/tester.py

@@ -13,7 +13,7 @@ class BaseTester(Action):
 
     def __init__(self, test_args):
         """
-        :param test_args: named tuple
+        :param test_args: a dict-like object that has __getitem__ method, can be accessed by "test_args["key_str"]"
         """
         super(BaseTester, self).__init__()
         self.validate_in_training = test_args["validate_in_training"]
@@ -28,6 +28,7 @@ class BaseTester(Action):
 
         self.model = None
         self.eval_history = []
+        self.batch_output = []
 
     def test(self, network):
         # print("--------------testing----------------")
@@ -40,7 +41,6 @@ class BaseTester(Action):
 
         self.iterator = iter(Batchifier(RandomSampler(dev_data), self.batch_size, drop_last=True))
 
-        batch_output = list()
         num_iter = len(dev_data) // self.batch_size
 
         for step in range(num_iter):
@@ -50,7 +50,7 @@ class BaseTester(Action):
             eval_results = self.evaluate(prediction, batch_y)
 
             if self.save_output:
-                batch_output.append(prediction)
+                self.batch_output.append(prediction)
             if self.save_loss:
                 self.eval_history.append(eval_results)
 
@@ -118,6 +118,13 @@ class BaseTester(Action):
             model.train()
         self.eval_history.clear()
 
+    def show_matrices(self):
+        """
+        This is called by Trainer to print evaluation on dev set.
+        :return print_str: str
+        """
+        raise NotImplementedError
+
 
 class POSTester(BaseTester):
     """
@@ -125,6 +132,9 @@ class POSTester(BaseTester):
     """
 
     def __init__(self, test_args):
+        """
+        :param test_args: a dict-like object that has __getitem__ method, can be accessed by "test_args["key_str"]"
+        """
         super(POSTester, self).__init__(test_args)
         self.max_len = None
         self.mask = None
@@ -148,7 +158,21 @@ class POSTester(BaseTester):
     def evaluate(self, predict, truth):
         truth = torch.Tensor(truth)
         loss, prediction = self.model.loss(predict, truth, self.mask, self.batch_size, self.max_len)
-        return loss.data
+        results = torch.Tensor(prediction[0][0]).view((-1, ))
+        accuracy = float(torch.sum(results == truth.view((-1, )))) / results.shape[0]
+        return [loss.data, accuracy]
 
     def matrices(self):
-        return np.mean(self.eval_history)
+        batch_loss = np.mean([x[0] for x in self.eval_history])
+        batch_accuracy = np.mean([x[1] for x in self.eval_history])
+        return batch_loss, batch_accuracy
+
+    def show_matrices(self):
+        """
+        This is called by Trainer to print evaluation on dev set.
+        :return print_str: str
+        """
+        loss, accuracy = self.matrices()
+        return "dev loss={:.2f}, accuracy={:.2f}".format(loss, accuracy)
+
+

fastNLP/action/trainer.py

@@ -24,7 +24,7 @@ class BaseTrainer(Action):
 
     def __init__(self, train_args):
         """
-        :param train_args: dict of (key, value)
+        :param train_args: dict of (key, value), or dict-like object. key is str.
 
         The base trainer requires the following keys:
         - epochs: int, the number of epochs in training
@@ -89,7 +89,8 @@ class BaseTrainer(Action):
                 if data_dev is None:
                     raise RuntimeError("No validation data provided.")
                 validator.test(network)
-                print("[epoch {}] dev loss={:.2f}".format(epoch, validator.matrices()))
+                print("[epoch {}]".format(epoch), end=" ")
+                print(validator.show_matrices())
 
         # finish training
 

fastNLP/loader/model_loader.py

@@ -0,0 +1,19 @@
+import torch
+
+from fastNLP.loader.base_loader import BaseLoader
+
+
+class ModelLoader(BaseLoader):
+    """
+        Loader for models.
+    """
+
+    def __init__(self, data_name, data_path):
+        super(ModelLoader, self).__init__(data_name, data_path)
+
+    def load_pytorch(self, empty_model):
+        """
+        Load model parameters from .pkl files into the empty PyTorch model.
+        :param empty_model: a PyTorch model with initialized parameters.
+        """
+        empty_model.load_state_dict(torch.load(self.data_path))

fastNLP/models/sequence_modeling.py

@@ -75,8 +75,8 @@ class SeqLabeling(BaseModel):
         :param mask: ByteTensor, [batch_size, max_len]
         :param batch_size: int
         :param max_len: int
-        :return loss:
-                prediction:
+        :return loss: a scalar Tensor
+                prediction: list of tuple of (decode path(list), best score)
         """
         x = x.float()
         y = y.long()

fastNLP/modules/encoder/char_embedding.py

@@ -0,0 +1,87 @@
+import torch
+import torch.nn.functional as F
+from torch import nn
+
+
+class ConvCharEmbedding(nn.Module):
+
+    def __init__(self, char_emb_size, feature_maps=(40, 30, 30), kernels=(3, 4, 5)):
+        """
+        Character Level Word Embedding
+        :param char_emb_size: the size of character level embedding,
+            say 26 characters, each embedded to 50 dim vector, then the input_size is 50.
+        :param feature_maps: table of feature maps (for each kernel width)
+        :param kernels: table of kernel widths
+        """
+        super(ConvCharEmbedding, self).__init__()
+        self.convs = nn.ModuleList([
+            nn.Conv2d(1, feature_maps[i], kernel_size=(char_emb_size, kernels[i]), bias=True, padding=(0, 4))
+            for i in range(len(kernels))])
+
+    def forward(self, x):
+        """
+        :param x: [batch_size * sent_length, word_length, char_emb_size]
+        :return: [batch_size * sent_length, sum(feature_maps), 1]
+        """
+        x = x.contiguous().view(x.size(0), 1, x.size(1), x.size(2))  # [batch_size*sent_length, channel, width, height]
+        x = x.transpose(2, 3)  # [batch_size*sent_length, channel, height, width]
+        return self.convolute(x).unsqueeze(2)
+
+    def convolute(self, x):
+        feats = []
+        for conv in self.convs:
+            y = conv(x)  # [batch_size*sent_length, feature_maps[i], 1, width - kernels[i] + 1]
+            y = torch.squeeze(y, 2)  # [batch_size*sent_length, feature_maps[i], width - kernels[i] + 1]
+            y = F.tanh(y)
+            y, __ = torch.max(y, 2)  # [batch_size*sent_length, feature_maps[i]]
+            feats.append(y)
+        return torch.cat(feats, 1)  # [batch_size*sent_length, sum(feature_maps)]
+
+
+class LSTMCharEmbedding(nn.Module):
+    """
+    Character Level Word Embedding with LSTM
+    :param char_emb_size: the size of character level embedding,
+        say 26 characters, each embedded to 50 dim vector, then the input_size is 50.
+    """
+
+    def __init__(self, char_emb_size, hidden_size=None):
+        super(LSTMCharEmbedding, self).__init__()
+        self.hidden_size = char_emb_size if hidden_size is None else hidden_size
+
+        self.lstm = nn.LSTM(input_size=char_emb_size,
+                            hidden_size=self.hidden_size,
+                            num_layers=1,
+                            bias=True,
+                            batch_first=True)
+
+    def forward(self, x):
+        """
+        :param x:[ n_batch*n_word, word_length, char_emb_size]
+        :return: [ n_batch*n_word, char_emb_size]
+        """
+        batch_size = x.shape[0]
+        h0 = torch.empty(1, batch_size, self.hidden_size)
+        h0 = nn.init.orthogonal_(h0)
+        c0 = torch.empty(1, batch_size, self.hidden_size)
+        c0 = nn.init.orthogonal_(c0)
+
+        _, hidden = self.lstm(x, (h0, c0))
+        return hidden[0].squeeze().unsqueeze(2)
+
+
+if __name__ == "__main__":
+    batch_size = 128
+    char_emb = 100
+    word_length = 1
+    x = torch.Tensor(batch_size, char_emb, word_length)
+    x = x.transpose(1, 2)
+    cce = ConvCharEmbedding(char_emb)
+    y = cce(x)
+    print("CNN Char Emb input: ", x.shape)
+    print("CNN Char Emb output: ", y.shape)  # [128, 100]
+
+    lce = LSTMCharEmbedding(char_emb)
+    o = lce(x)
+    print("LSTM Char Emb input: ", x.shape)
+    print("LSTM Char Emb size: ", o.shape)

fastNLP/modules/encoder/masked_rnn.py

@@ -0,0 +1,422 @@
+__author__ = 'max'
+
+import torch
+import torch.nn as nn
+import torch.nn.functional as F
+
+
+def MaskedRecurrent(reverse=False):
+    def forward(input, hidden, cell, mask, train=True, dropout=0):
+        """
+        :param input:
+        :param hidden:
+        :param cell:
+        :param mask:
+        :param dropout: step之间的dropout，对mask了的也会drop，应该是没问题的，反正没有gradient
+        :param train: 控制dropout的行为，在StackedRNN的forward中调用
+        :return:
+        """
+        output = []
+        steps = range(input.size(0) - 1, -1, -1) if reverse else range(input.size(0))
+        for i in steps:
+            if mask is None or mask[i].data.min() > 0.5:  # 没有mask，都是1
+                hidden = cell(input[i], hidden)
+            elif mask[i].data.max() > 0.5:  # 有mask，但不全为0
+                hidden_next = cell(input[i], hidden)  # 一次喂入一个batch！
+                # hack to handle LSTM
+                if isinstance(hidden, tuple):  # LSTM outputs a tuple of (hidden, cell), this is a common hack 😁
+                    mask = mask.float()
+                    hx, cx = hidden
+                    hp1, cp1 = hidden_next
+                    hidden = (
+                        hx + (hp1 - hx) * mask[i].squeeze(),
+                        cx + (cp1 - cx) * mask[i].squeeze())  # Why? 我知道了！！如果是mask就不用改变
+                else:
+                    hidden = hidden + (hidden_next - hidden) * mask[i]
+
+            # if dropout != 0 and train: # warning, should i treat masked tensor differently?
+            #     if isinstance(hidden, tuple):
+            #         hidden = (F.dropout(hidden[0], p=dropout, training=train),
+            #                   F.dropout(hidden[1], p=dropout, training=train))
+            #     else:
+            #         hidden = F.dropout(hidden, p=dropout, training=train)
+
+            # hack to handle LSTM
+            output.append(hidden[0] if isinstance(hidden, tuple) else hidden)
+
+        if reverse:
+            output.reverse()
+        output = torch.cat(output, 0).view(input.size(0), *output[0].size())
+
+        return hidden, output
+
+    return forward
+
+
+def StackedRNN(inners, num_layers, lstm=False, train=True, step_dropout=0, layer_dropout=0):
+    num_directions = len(inners)  # rec_factory!
+    total_layers = num_layers * num_directions
+
+    def forward(input, hidden, cells, mask):
+        assert (len(cells) == total_layers)
+        next_hidden = []
+
+        if lstm:
+            hidden = list(zip(*hidden))
+
+        for i in range(num_layers):
+            all_output = []
+            for j, inner in enumerate(inners):
+                l = i * num_directions + j
+                hy, output = inner(input, hidden[l], cells[l], mask, step_dropout, train)
+                next_hidden.append(hy)
+                all_output.append(output)
+
+            input = torch.cat(all_output, input.dim() - 1)  # 下一层的输入
+
+            if layer_dropout != 0 and i < num_layers - 1:
+                input = F.dropout(input, p=layer_dropout, training=train, inplace=False)
+
+        if lstm:
+            next_h, next_c = zip(*next_hidden)
+            next_hidden = (
+                torch.cat(next_h, 0).view(total_layers, *next_h[0].size()),
+                torch.cat(next_c, 0).view(total_layers, *next_c[0].size())
+            )
+        else:
+            next_hidden = torch.cat(next_hidden, 0).view(total_layers, *next_hidden[0].size())
+
+        return next_hidden, input
+
+    return forward
+
+
+def AutogradMaskedRNN(num_layers=1, batch_first=False, train=True, layer_dropout=0, step_dropout=0,
+                      bidirectional=False, lstm=False):
+    rec_factory = MaskedRecurrent
+
+    if bidirectional:
+        layer = (rec_factory(), rec_factory(reverse=True))
+    else:
+        layer = (rec_factory(),)  # rec_factory 就是每层的结构啦！！在MaskedRecurrent中进行每层的计算！然后用StackedRNN接起来
+
+    func = StackedRNN(layer,
+                      num_layers,
+                      lstm=lstm,
+                      layer_dropout=layer_dropout, step_dropout=step_dropout,
+                      train=train)
+
+    def forward(input, cells, hidden, mask):
+        if batch_first:
+            input = input.transpose(0, 1)
+            if mask is not None:
+                mask = mask.transpose(0, 1)
+
+        nexth, output = func(input, hidden, cells, mask)
+
+        if batch_first:
+            output = output.transpose(0, 1)
+
+        return output, nexth
+
+    return forward
+
+
+def MaskedStep():
+    def forward(input, hidden, cell, mask):
+        if mask is None or mask.data.min() > 0.5:
+            hidden = cell(input, hidden)
+        elif mask.data.max() > 0.5:
+            hidden_next = cell(input, hidden)
+            # hack to handle LSTM
+            if isinstance(hidden, tuple):
+                hx, cx = hidden
+                hp1, cp1 = hidden_next
+                hidden = (hx + (hp1 - hx) * mask, cx + (cp1 - cx) * mask)
+            else:
+                hidden = hidden + (hidden_next - hidden) * mask
+        # hack to handle LSTM
+        output = hidden[0] if isinstance(hidden, tuple) else hidden
+
+        return hidden, output
+
+    return forward
+
+
+def StackedStep(layer, num_layers, lstm=False, dropout=0, train=True):
+    def forward(input, hidden, cells, mask):
+        assert (len(cells) == num_layers)
+        next_hidden = []
+
+        if lstm:
+            hidden = list(zip(*hidden))
+
+        for l in range(num_layers):
+            hy, output = layer(input, hidden[l], cells[l], mask)
+            next_hidden.append(hy)
+            input = output
+
+            if dropout != 0 and l < num_layers - 1:
+                input = F.dropout(input, p=dropout, training=train, inplace=False)
+
+        if lstm:
+            next_h, next_c = zip(*next_hidden)
+            next_hidden = (
+                torch.cat(next_h, 0).view(num_layers, *next_h[0].size()),
+                torch.cat(next_c, 0).view(num_layers, *next_c[0].size())
+            )
+        else:
+            next_hidden = torch.cat(next_hidden, 0).view(num_layers, *next_hidden[0].size())
+
+        return next_hidden, input
+
+    return forward
+
+
+def AutogradMaskedStep(num_layers=1, dropout=0, train=True, lstm=False):
+    layer = MaskedStep()
+
+    func = StackedStep(layer,
+                       num_layers,
+                       lstm=lstm,
+                       dropout=dropout,
+                       train=train)
+
+    def forward(input, cells, hidden, mask):
+        nexth, output = func(input, hidden, cells, mask)
+        return output, nexth
+
+    return forward
+
+
+class MaskedRNNBase(nn.Module):
+    def __init__(self, Cell, input_size, hidden_size,
+                 num_layers=1, bias=True, batch_first=False,
+                 layer_dropout=0, step_dropout=0, bidirectional=False, **kwargs):
+        """
+        :param Cell:
+        :param input_size:
+        :param hidden_size:
+        :param num_layers:
+        :param bias:
+        :param batch_first:
+        :param layer_dropout:
+        :param step_dropout:
+        :param bidirectional:
+        :param kwargs:
+        """
+
+        super(MaskedRNNBase, self).__init__()
+        self.Cell = Cell
+        self.input_size = input_size
+        self.hidden_size = hidden_size
+        self.num_layers = num_layers
+        self.bias = bias
+        self.batch_first = batch_first
+        self.layer_dropout = layer_dropout
+        self.step_dropout = step_dropout
+        self.bidirectional = bidirectional
+        num_directions = 2 if bidirectional else 1
+
+        self.all_cells = []
+        for layer in range(num_layers):  # 初始化所有cell
+            for direction in range(num_directions):
+                layer_input_size = input_size if layer == 0 else hidden_size * num_directions
+
+                cell = self.Cell(layer_input_size, hidden_size, self.bias, **kwargs)
+                self.all_cells.append(cell)
+                self.add_module('cell%d' % (layer * num_directions + direction), cell)  # Max的代码写得真好看
+
+    def reset_parameters(self):
+        for cell in self.all_cells:
+            cell.reset_parameters()
+
+    def forward(self, input, mask=None, hx=None):
+        batch_size = input.size(0) if self.batch_first else input.size(1)
+        lstm = self.Cell is nn.LSTMCell
+        if hx is None:
+            num_directions = 2 if self.bidirectional else 1
+            hx = torch.autograd.Variable(
+                input.data.new(self.num_layers * num_directions, batch_size, self.hidden_size).zero_())
+            if lstm:
+                hx = (hx, hx)
+
+        func = AutogradMaskedRNN(num_layers=self.num_layers,
+                                 batch_first=self.batch_first,
+                                 step_dropout=self.step_dropout,
+                                 layer_dropout=self.layer_dropout,
+                                 train=self.training,
+                                 bidirectional=self.bidirectional,
+                                 lstm=lstm)  # 传入all_cells，继续往底层封装走
+
+        output, hidden = func(input, self.all_cells, hx,
+                              None if mask is None else mask.view(mask.size() + (1,)))  # 这个+ (1, )是个什么操作？
+        return output, hidden
+
+    def step(self, input, hx=None, mask=None):
+        '''
+        execute one step forward (only for one-directional RNN).
+        Args:
+            input (batch, input_size): input tensor of this step.
+            hx (num_layers, batch, hidden_size): the hidden state of last step.
+            mask (batch): the mask tensor of this step.
+        Returns:
+            output (batch, hidden_size): tensor containing the output of this step from the last layer of RNN.
+            hn (num_layers, batch, hidden_size): tensor containing the hidden state of this step
+        '''
+        assert not self.bidirectional, "step only cannot be applied to bidirectional RNN."  # aha, typo!
+        batch_size = input.size(0)
+        lstm = self.Cell is nn.LSTMCell
+        if hx is None:
+            hx = torch.autograd.Variable(input.data.new(self.num_layers, batch_size, self.hidden_size).zero_())
+            if lstm:
+                hx = (hx, hx)
+
+        func = AutogradMaskedStep(num_layers=self.num_layers,
+                                  dropout=self.dropout,
+                                  train=self.training,
+                                  lstm=lstm)
+
+        output, hidden = func(input, self.all_cells, hx, mask)
+        return output, hidden
+
+
+class MaskedRNN(MaskedRNNBase):
+    r"""Applies a multi-layer Elman RNN with costomized non-linearity to an
+    input sequence.
+    For each element in the input sequence, each layer computes the following
+    function:
+    .. math::
+        h_t = \tanh(w_{ih} * x_t + b_{ih}  +  w_{hh} * h_{(t-1)} + b_{hh})
+    where :math:`h_t` is the hidden state at time `t`, and :math:`x_t` is
+    the hidden state of the previous layer at time `t` or :math:`input_t`
+    for the first layer. If nonlinearity='relu', then `ReLU` is used instead
+    of `tanh`.
+    Args:
+        input_size: The number of expected features in the input x
+        hidden_size: The number of features in the hidden state h
+        num_layers: Number of recurrent layers.
+        nonlinearity: The non-linearity to use ['tanh'|'relu']. Default: 'tanh'
+        bias: If False, then the layer does not use bias weights b_ih and b_hh.
+            Default: True
+        batch_first: If True, then the input and output tensors are provided
+            as (batch, seq, feature)
+        dropout: If non-zero, introduces a dropout layer on the outputs of each
+            RNN layer except the last layer
+        bidirectional: If True, becomes a bidirectional RNN. Default: False
+    Inputs: input, mask, h_0
+        - **input** (seq_len, batch, input_size): tensor containing the features
+          of the input sequence.
+          **mask** (seq_len, batch): 0-1 tensor containing the mask of the input sequence.
+        - **h_0** (num_layers * num_directions, batch, hidden_size): tensor
+          containing the initial hidden state for each element in the batch.
+    Outputs: output, h_n
+        - **output** (seq_len, batch, hidden_size * num_directions): tensor
+          containing the output features (h_k) from the last layer of the RNN,
+          for each k.  If a :class:`torch.nn.utils.rnn.PackedSequence` has
+          been given as the input, the output will also be a packed sequence.
+        - **h_n** (num_layers * num_directions, batch, hidden_size): tensor
+          containing the hidden state for k=seq_len.
+    """
+
+    def __init__(self, *args, **kwargs):
+        super(MaskedRNN, self).__init__(nn.RNNCell, *args, **kwargs)
+
+
+class MaskedLSTM(MaskedRNNBase):
+    r"""Applies a multi-layer long short-term memory (LSTM) RNN to an input
+    sequence.
+    For each element in the input sequence, each layer computes the following
+    function:
+    .. math::
+            \begin{array}{ll}
+            i_t = \mathrm{sigmoid}(W_{ii} x_t + b_{ii} + W_{hi} h_{(t-1)} + b_{hi}) \\
+            f_t = \mathrm{sigmoid}(W_{if} x_t + b_{if} + W_{hf} h_{(t-1)} + b_{hf}) \\
+            g_t = \tanh(W_{ig} x_t + b_{ig} + W_{hc} h_{(t-1)} + b_{hg}) \\
+            o_t = \mathrm{sigmoid}(W_{io} x_t + b_{io} + W_{ho} h_{(t-1)} + b_{ho}) \\
+            c_t = f_t * c_{(t-1)} + i_t * g_t \\
+            h_t = o_t * \tanh(c_t)
+            \end{array}
+    where :math:`h_t` is the hidden state at time `t`, :math:`c_t` is the cell
+    state at time `t`, :math:`x_t` is the hidden state of the previous layer at
+    time `t` or :math:`input_t` for the first layer, and :math:`i_t`,
+    :math:`f_t`, :math:`g_t`, :math:`o_t` are the input, forget, cell,
+    and out gates, respectively.
+    Args:
+        input_size: The number of expected features in the input x
+        hidden_size: The number of features in the hidden state h
+        num_layers: Number of recurrent layers.
+        bias: If False, then the layer does not use bias weights b_ih and b_hh.
+            Default: True
+        batch_first: If True, then the input and output tensors are provided
+            as (batch, seq, feature)
+        dropout: If non-zero, introduces a dropout layer on the outputs of each
+            RNN layer except the last layer
+        bidirectional: If True, becomes a bidirectional RNN. Default: False
+    Inputs: input, mask, (h_0, c_0)
+        - **input** (seq_len, batch, input_size): tensor containing the features
+          of the input sequence.
+          **mask** (seq_len, batch): 0-1 tensor containing the mask of the input sequence.
+        - **h_0** (num_layers \* num_directions, batch, hidden_size): tensor
+          containing the initial hidden state for each element in the batch.
+        - **c_0** (num_layers \* num_directions, batch, hidden_size): tensor
+          containing the initial cell state for each element in the batch.
+    Outputs: output, (h_n, c_n)
+        - **output** (seq_len, batch, hidden_size * num_directions): tensor
+          containing the output features `(h_t)` from the last layer of the RNN,
+          for each t. If a :class:`torch.nn.utils.rnn.PackedSequence` has been
+          given as the input, the output will also be a packed sequence.
+        - **h_n** (num_layers * num_directions, batch, hidden_size): tensor
+          containing the hidden state for t=seq_len
+        - **c_n** (num_layers * num_directions, batch, hidden_size): tensor
+          containing the cell state for t=seq_len
+    """
+
+    def __init__(self, *args, **kwargs):
+        super(MaskedLSTM, self).__init__(nn.LSTMCell, *args, **kwargs)
+
+
+class MaskedGRU(MaskedRNNBase):
+    r"""Applies a multi-layer gated recurrent unit (GRU) RNN to an input sequence.
+    For each element in the input sequence, each layer computes the following
+    function:
+    .. math::
+            \begin{array}{ll}
+            r_t = \mathrm{sigmoid}(W_{ir} x_t + b_{ir} + W_{hr} h_{(t-1)} + b_{hr}) \\
+            z_t = \mathrm{sigmoid}(W_{iz} x_t + b_{iz} + W_{hz} h_{(t-1)} + b_{hz}) \\
+            n_t = \tanh(W_{in} x_t + b_{in} + r_t * (W_{hn} h_{(t-1)}+ b_{hn})) \\
+            h_t = (1 - z_t) * n_t + z_t * h_{(t-1)} \\
+            \end{array}
+    where :math:`h_t` is the hidden state at time `t`, :math:`x_t` is the hidden
+    state of the previous layer at time `t` or :math:`input_t` for the first
+    layer, and :math:`r_t`, :math:`z_t`, :math:`n_t` are the reset, input,
+    and new gates, respectively.
+    Args:
+        input_size: The number of expected features in the input x
+        hidden_size: The number of features in the hidden state h
+        num_layers: Number of recurrent layers.
+        nonlinearity: The non-linearity to use ['tanh'|'relu']. Default: 'tanh'
+        bias: If False, then the layer does not use bias weights b_ih and b_hh.
+            Default: True
+        batch_first: If True, then the input and output tensors are provided
+            as (batch, seq, feature)
+        dropout: If non-zero, introduces a dropout layer on the outputs of each
+            RNN layer except the last layer
+        bidirectional: If True, becomes a bidirectional RNN. Default: False
+    Inputs: input, mask, h_0
+        - **input** (seq_len, batch, input_size): tensor containing the features
+          of the input sequence.
+          **mask** (seq_len, batch): 0-1 tensor containing the mask of the input sequence.
+        - **h_0** (num_layers * num_directions, batch, hidden_size): tensor
+          containing the initial hidden state for each element in the batch.
+    Outputs: output, h_n
+        - **output** (seq_len, batch, hidden_size * num_directions): tensor
+          containing the output features (h_k) from the last layer of the RNN,
+          for each k.  If a :class:`torch.nn.utils.rnn.PackedSequence` has
+          been given as the input, the output will also be a packed sequence.
+        - **h_n** (num_layers * num_directions, batch, hidden_size): tensor
+          containing the hidden state for k=seq_len.
+    """
+
+    def __init__(self, *args, **kwargs):
+        super(MaskedGRU, self).__init__(nn.GRUCell, *args, **kwargs)

fastNLP/modules/encoder/variational_rnn.py

@@ -0,0 +1,384 @@
+import math
+
+import torch
+import torch.nn as nn
+import torch.nn.functional as F
+from torch.nn._functions.thnn import rnnFusedPointwise as fusedBackend
+from torch.nn.parameter import Parameter
+
+
+def default_initializer(hidden_size):
+    stdv = 1.0 / math.sqrt(hidden_size)
+
+    def forward(tensor):
+        nn.init.uniform_(tensor, -stdv, stdv)
+
+    return forward
+
+
+def VarMaskedRecurrent(reverse=False):
+    def forward(input, hidden, cell, mask):
+        output = []
+        steps = range(input.size(0) - 1, -1, -1) if reverse else range(input.size(0))
+        for i in steps:
+            if mask is None or mask[i].data.min() > 0.5:
+                hidden = cell(input[i], hidden)
+            elif mask[i].data.max() > 0.5:
+                hidden_next = cell(input[i], hidden)
+                # hack to handle LSTM
+                if isinstance(hidden, tuple):
+                    hx, cx = hidden
+                    hp1, cp1 = hidden_next
+                    hidden = (hx + (hp1 - hx) * mask[i], cx + (cp1 - cx) * mask[i])
+                else:
+                    hidden = hidden + (hidden_next - hidden) * mask[i]
+            # hack to handle LSTM
+            output.append(hidden[0] if isinstance(hidden, tuple) else hidden)
+
+        if reverse:
+            output.reverse()
+        output = torch.cat(output, 0).view(input.size(0), *output[0].size())
+
+        return hidden, output
+
+    return forward
+
+
+def StackedRNN(inners, num_layers, lstm=False):
+    num_directions = len(inners)
+    total_layers = num_layers * num_directions
+
+    def forward(input, hidden, cells, mask):
+        assert (len(cells) == total_layers)
+        next_hidden = []
+
+        if lstm:
+            hidden = list(zip(*hidden))
+
+        for i in range(num_layers):
+            all_output = []
+            for j, inner in enumerate(inners):
+                l = i * num_directions + j
+                hy, output = inner(input, hidden[l], cells[l], mask)
+                next_hidden.append(hy)
+                all_output.append(output)
+
+            input = torch.cat(all_output, input.dim() - 1)
+
+        if lstm:
+            next_h, next_c = zip(*next_hidden)
+            next_hidden = (
+                torch.cat(next_h, 0).view(total_layers, *next_h[0].size()),
+                torch.cat(next_c, 0).view(total_layers, *next_c[0].size())
+            )
+        else:
+            next_hidden = torch.cat(next_hidden, 0).view(total_layers, *next_hidden[0].size())
+
+        return next_hidden, input
+
+    return forward
+
+
+def AutogradVarMaskedRNN(num_layers=1, batch_first=False, bidirectional=False, lstm=False):
+    rec_factory = VarMaskedRecurrent
+
+    if bidirectional:
+        layer = (rec_factory(), rec_factory(reverse=True))
+    else:
+        layer = (rec_factory(),)
+
+    func = StackedRNN(layer,
+                      num_layers,
+                      lstm=lstm)
+
+    def forward(input, cells, hidden, mask):
+        if batch_first:
+            input = input.transpose(0, 1)
+            if mask is not None:
+                mask = mask.transpose(0, 1)
+
+        nexth, output = func(input, hidden, cells, mask)
+
+        if batch_first:
+            output = output.transpose(0, 1)
+
+        return output, nexth
+
+    return forward
+
+
+def VarMaskedStep():
+    def forward(input, hidden, cell, mask):
+        if mask is None or mask.data.min() > 0.5:
+            hidden = cell(input, hidden)
+        elif mask.data.max() > 0.5:
+            hidden_next = cell(input, hidden)
+            # hack to handle LSTM
+            if isinstance(hidden, tuple):
+                hx, cx = hidden
+                hp1, cp1 = hidden_next
+                hidden = (hx + (hp1 - hx) * mask, cx + (cp1 - cx) * mask)
+            else:
+                hidden = hidden + (hidden_next - hidden) * mask
+        # hack to handle LSTM
+        output = hidden[0] if isinstance(hidden, tuple) else hidden
+
+        return hidden, output
+
+    return forward
+
+
+def StackedStep(layer, num_layers, lstm=False):
+    def forward(input, hidden, cells, mask):
+        assert (len(cells) == num_layers)
+        next_hidden = []
+
+        if lstm:
+            hidden = list(zip(*hidden))
+
+        for l in range(num_layers):
+            hy, output = layer(input, hidden[l], cells[l], mask)
+            next_hidden.append(hy)
+            input = output
+
+        if lstm:
+            next_h, next_c = zip(*next_hidden)
+            next_hidden = (
+                torch.cat(next_h, 0).view(num_layers, *next_h[0].size()),
+                torch.cat(next_c, 0).view(num_layers, *next_c[0].size())
+            )
+        else:
+            next_hidden = torch.cat(next_hidden, 0).view(num_layers, *next_hidden[0].size())
+
+        return next_hidden, input
+
+    return forward
+
+
+def AutogradVarMaskedStep(num_layers=1, lstm=False):
+    layer = VarMaskedStep()
+
+    func = StackedStep(layer,
+                       num_layers,
+                       lstm=lstm)
+
+    def forward(input, cells, hidden, mask):
+        nexth, output = func(input, hidden, cells, mask)
+        return output, nexth
+
+    return forward
+
+
+class VarMaskedRNNBase(nn.Module):
+    def __init__(self, Cell, input_size, hidden_size,
+                 num_layers=1, bias=True, batch_first=False,
+                 dropout=(0, 0), bidirectional=False, initializer=None, **kwargs):
+
+        super(VarMaskedRNNBase, self).__init__()
+        self.Cell = Cell
+        self.input_size = input_size
+        self.hidden_size = hidden_size
+        self.num_layers = num_layers
+        self.bias = bias
+        self.batch_first = batch_first
+        self.bidirectional = bidirectional
+        self.lstm = False
+        num_directions = 2 if bidirectional else 1
+
+        self.all_cells = []
+        for layer in range(num_layers):
+            for direction in range(num_directions):
+                layer_input_size = input_size if layer == 0 else hidden_size * num_directions
+
+                cell = self.Cell(layer_input_size, hidden_size, self.bias, p=dropout, initializer=initializer, **kwargs)
+                self.all_cells.append(cell)
+                self.add_module('cell%d' % (layer * num_directions + direction), cell)
+
+    def reset_parameters(self):
+        for cell in self.all_cells:
+            cell.reset_parameters()
+
+    def reset_noise(self, batch_size):
+        for cell in self.all_cells:
+            cell.reset_noise(batch_size)
+
+    def forward(self, input, mask=None, hx=None):
+        batch_size = input.size(0) if self.batch_first else input.size(1)
+        if hx is None:
+            num_directions = 2 if self.bidirectional else 1
+            hx = torch.tensor(input.data.new(self.num_layers * num_directions, batch_size, self.hidden_size).zero_(),
+                              requires_grad=True)
+            if self.lstm:
+                hx = (hx, hx)
+
+        func = AutogradVarMaskedRNN(num_layers=self.num_layers,
+                                    batch_first=self.batch_first,
+                                    bidirectional=self.bidirectional,
+                                    lstm=self.lstm)
+
+        self.reset_noise(batch_size)
+
+        output, hidden = func(input, self.all_cells, hx, None if mask is None else mask.view(mask.size() + (1,)))
+        return output, hidden
+
+    def step(self, input, hx=None, mask=None):
+        '''
+        execute one step forward (only for one-directional RNN).
+        Args:
+            input (batch, input_size): input tensor of this step.
+            hx (num_layers, batch, hidden_size): the hidden state of last step.
+            mask (batch): the mask tensor of this step.
+        Returns:
+            output (batch, hidden_size): tensor containing the output of this step from the last layer of RNN.
+            hn (num_layers, batch, hidden_size): tensor containing the hidden state of this step
+        '''
+        assert not self.bidirectional, "step only cannot be applied to bidirectional RNN."
+        batch_size = input.size(0)
+        if hx is None:
+            hx = torch.tensor(input.data.new(self.num_layers, batch_size, self.hidden_size).zero_(), requires_grad=True)
+            if self.lstm:
+                hx = (hx, hx)
+
+        func = AutogradVarMaskedStep(num_layers=self.num_layers, lstm=self.lstm)
+
+        output, hidden = func(input, self.all_cells, hx, mask)
+        return output, hidden
+
+
+class VarMaskedFastLSTM(VarMaskedRNNBase):
+    def __init__(self, *args, **kwargs):
+        super(VarMaskedFastLSTM, self).__init__(VarFastLSTMCell, *args, **kwargs)
+        self.lstm = True
+
+
+class VarRNNCellBase(nn.Module):
+    def __repr__(self):
+        s = '{name}({input_size}, {hidden_size}'
+        if 'bias' in self.__dict__ and self.bias is not True:
+            s += ', bias={bias}'
+        if 'nonlinearity' in self.__dict__ and self.nonlinearity != "tanh":
+            s += ', nonlinearity={nonlinearity}'
+        s += ')'
+        return s.format(name=self.__class__.__name__, **self.__dict__)
+
+    def reset_noise(self, batch_size):
+        """
+        Should be overriden by all subclasses.
+        Args:
+            batch_size: (int) batch size of input.
+        """
+        raise NotImplementedError
+
+
+class VarFastLSTMCell(VarRNNCellBase):
+    """
+    A long short-term memory (LSTM) cell with variational dropout.
+    .. math::
+        \begin{array}{ll}
+        i = \mathrm{sigmoid}(W_{ii} x + b_{ii} + W_{hi} h + b_{hi}) \\
+        f = \mathrm{sigmoid}(W_{if} x + b_{if} + W_{hf} h + b_{hf}) \\
+        g = \tanh(W_{ig} x + b_{ig} + W_{hc} h + b_{hg}) \\
+        o = \mathrm{sigmoid}(W_{io} x + b_{io} + W_{ho} h + b_{ho}) \\
+        c' = f * c + i * g \\
+        h' = o * \tanh(c') \\
+        \end{array}
+    """
+
+    def __init__(self, input_size, hidden_size, bias=True, p=(0.5, 0.5), initializer=None):
+        super(VarFastLSTMCell, self).__init__()
+        self.input_size = input_size
+        self.hidden_size = hidden_size
+        self.bias = bias
+        self.weight_ih = Parameter(torch.Tensor(4 * hidden_size, input_size))
+        self.weight_hh = Parameter(torch.Tensor(4 * hidden_size, hidden_size))
+        if bias:
+            self.bias_ih = Parameter(torch.Tensor(4 * hidden_size))
+            self.bias_hh = Parameter(torch.Tensor(4 * hidden_size))
+        else:
+            self.register_parameter('bias_ih', None)
+            self.register_parameter('bias_hh', None)
+
+        self.initializer = default_initializer(self.hidden_size) if initializer is None else initializer
+        self.reset_parameters()
+        p_in, p_hidden = p
+        if p_in < 0 or p_in > 1:
+            raise ValueError("input dropout probability has to be between 0 and 1, "
+                             "but got {}".format(p_in))
+        if p_hidden < 0 or p_hidden > 1:
+            raise ValueError("hidden state dropout probability has to be between 0 and 1, "
+                             "but got {}".format(p_hidden))
+        self.p_in = p_in
+        self.p_hidden = p_hidden
+        self.noise_in = None
+        self.noise_hidden = None
+
+    def reset_parameters(self):
+        for weight in self.parameters():
+            if weight.dim() == 1:
+                weight.data.zero_()
+            else:
+                self.initializer(weight.data)
+
+    def reset_noise(self, batch_size):
+        if self.training:
+            if self.p_in:
+                noise = self.weight_ih.data.new(batch_size, self.input_size)
+                self.noise_in = torch.tensor(noise.bernoulli_(1.0 - self.p_in) / (1.0 - self.p_in))
+            else:
+                self.noise_in = None
+
+            if self.p_hidden:
+                noise = self.weight_hh.data.new(batch_size, self.hidden_size)
+                self.noise_hidden = torch.tensor(noise.bernoulli_(1.0 - self.p_hidden) / (1.0 - self.p_hidden))
+            else:
+                self.noise_hidden = None
+        else:
+            self.noise_in = None
+            self.noise_hidden = None
+
+    def forward(self, input, hx):
+        return self.__forward(
+            input, hx,
+            self.weight_ih, self.weight_hh,
+            self.bias_ih, self.bias_hh,
+            self.noise_in, self.noise_hidden,
+        )
+
+    @staticmethod
+    def __forward(input, hidden, w_ih, w_hh, b_ih=None, b_hh=None, noise_in=None, noise_hidden=None):
+        if noise_in is not None:
+            if input.is_cuda:
+                input = input * noise_in.cuda(input.get_device())
+            else:
+                input = input * noise_in
+
+        if input.is_cuda:
+            w_ih = w_ih.cuda(input.get_device())
+            w_hh = w_hh.cuda(input.get_device())
+            hidden = [h.cuda(input.get_device()) for h in hidden]
+            b_ih = b_ih.cuda(input.get_device())
+            b_hh = b_hh.cuda(input.get_device())
+            igates = F.linear(input, w_ih.cuda(input.get_device()))
+            hgates = F.linear(hidden[0], w_hh) if noise_hidden is None \
+                else F.linear(hidden[0] * noise_hidden.cuda(input.get_device()), w_hh)
+            state = fusedBackend.LSTMFused.apply
+            # print("use backend")
+            # use some magic function
+            return state(igates, hgates, hidden[1]) if b_ih is None else state(igates, hgates, hidden[1], b_ih, b_hh)
+
+        hx, cx = hidden
+        if noise_hidden is not None:
+            hx = hx * noise_hidden
+        gates = F.linear(input, w_ih, b_ih) + F.linear(hx, w_hh, b_hh)
+
+        ingate, forgetgate, cellgate, outgate = gates.chunk(4, 1)
+
+        ingate = F.sigmoid(ingate)
+        forgetgate = F.sigmoid(forgetgate)
+        cellgate = F.tanh(cellgate)
+        outgate = F.sigmoid(outgate)
+
+        cy = (forgetgate * cx) + (ingate * cellgate)
+        hy = outgate * F.tanh(cy)
+
+        return hy, cy

fastNLP/modules/other_modules.py

@@ -0,0 +1,489 @@
+"""
+This is borrowed from FudanParser. Not stable. Do not use !!!
+
+"""
+import numpy as np
+import torch.nn as nn
+import torch.nn.functional as F
+from torch.nn import Parameter
+from .utils import orthogonal
+import torch
+import torch.utils.data
+import numpy
+from torch.autograd import Function, Variable
+from torch import optim
+
+
+class GroupNorm(nn.Module):
+    def __init__(self, num_features, num_groups=20, eps=1e-5):
+        super(GroupNorm, self).__init__()
+        self.weight = nn.Parameter(torch.ones(1, num_features, 1))
+        self.bias = nn.Parameter(torch.zeros(1, num_features, 1))
+        self.num_groups = num_groups
+        self.eps = eps
+
+    def forward(self, x):
+        N, C, H = x.size()
+        G = self.num_groups
+        assert C % G == 0
+
+        x = x.view(N, G, -1)
+        mean = x.mean(-1, keepdim=True)
+        var = x.var(-1, keepdim=True)
+
+        x = (x - mean) / (var + self.eps).sqrt()
+        x = x.view(N, C, H)
+        return x * self.weight + self.bias
+
+
+class LayerNormalization(nn.Module):
+    """ Layer normalization module """
+
+    def __init__(self, d_hid, eps=1e-3):
+        super(LayerNormalization, self).__init__()
+
+        self.eps = eps
+        self.a_2 = nn.Parameter(torch.ones(d_hid), requires_grad=True)
+        self.b_2 = nn.Parameter(torch.zeros(d_hid), requires_grad=True)
+
+    def forward(self, z):
+        if z.size(1) == 1:
+            return z
+
+        mu = torch.mean(z, keepdim=True, dim=-1)
+        sigma = torch.std(z, keepdim=True, dim=-1)
+        ln_out = (z - mu.expand_as(z)) / (sigma.expand_as(z) + self.eps)
+        ln_out = ln_out * self.a_2.expand_as(ln_out) + self.b_2.expand_as(ln_out)
+
+        return ln_out
+
+
+class OrthEmbedding(nn.Embedding):
+    def __init__(self, *args, **kwargs):
+        super(OrthEmbedding, self).__init__(*args, **kwargs)
+
+    def reset_parameters(self):
+        self.weight = orthogonal(self.weight)
+        nn.init.constant_(self.bias, 0.)
+
+
+class BiLinear(nn.Module):
+    def __init__(self, n_left, n_right, n_out, bias=True):
+        """
+        Args:
+            n_left: size of left input
+            n_right: size of right input
+            n_out: size of output
+            bias: If set to False, the layer will not learn an additive bias.
+                Default: True
+        """
+        super(BiLinear, self).__init__()
+        self.n_left = n_left
+        self.n_right = n_right
+        self.n_out = n_out
+
+        self.U = Parameter(torch.Tensor(self.n_out, self.n_left, self.n_right))
+        self.W_l = Parameter(torch.Tensor(self.n_out, self.n_left))
+        self.W_r = Parameter(torch.Tensor(self.n_out, self.n_left))
+
+        if bias:
+            self.bias = Parameter(torch.Tensor(n_out))
+        else:
+            self.register_parameter('bias', None)
+
+        self.reset_parameters()
+
+    def reset_parameters(self):
+        nn.init.xavier_uniform_(self.W_l)
+        nn.init.xavier_uniform_(self.W_r)
+        nn.init.constant_(self.bias, 0.)
+        nn.init.xavier_uniform_(self.U)
+
+    def forward(self, input_left, input_right):
+        """
+        Args:
+            input_left: Tensor
+                the left input tensor with shape = [batch1, batch2, ..., left_features]
+            input_right: Tensor
+                the right input tensor with shape = [batch1, batch2, ..., right_features]
+        Returns:
+        """
+        left_size = input_left.size()
+        right_size = input_right.size()
+        assert left_size[:-1] == right_size[:-1], \
+            "batch size of left and right inputs mis-match: (%s, %s)" % (left_size[:-1], right_size[:-1])
+        batch = int(np.prod(left_size[:-1]))
+
+        # convert left and right input to matrices [batch, left_features], [batch, right_features]
+        input_left = input_left.view(batch, self.n_left)
+        input_right = input_right.view(batch, self.n_right)
+
+        # output [batch, out_features]
+        output = F.bilinear(input_left, input_right, self.U, self.bias)
+        output = output + \
+                 F.linear(input_left, self.W_l, None) + \
+                 F.linear(input_right, self.W_r, None)
+        # convert back to [batch1, batch2, ..., out_features]
+        return output.view(left_size[:-1] + (self.n_out,))
+
+    def __repr__(self):
+        return self.__class__.__name__ + ' (' \
+               + 'in1_features=' + str(self.n_left) \
+               + ', in2_features=' + str(self.n_right) \
+               + ', out_features=' + str(self.n_out) + ')'
+
+
+class BiAffine(nn.Module):
+    def __init__(self, n_enc, n_dec, n_labels, biaffine=True, **kwargs):
+        """
+        Args:
+            n_enc: int
+                the dimension of the encoder input.
+            n_dec: int
+                the dimension of the decoder input.
+            n_labels: int
+                the number of labels of the crf layer
+            biaffine: bool
+                if apply bi-affine parameter.
+            **kwargs:
+        """
+        super(BiAffine, self).__init__()
+        self.n_enc = n_enc
+        self.n_dec = n_dec
+        self.num_labels = n_labels
+        self.biaffine = biaffine
+
+        self.W_d = Parameter(torch.Tensor(self.num_labels, self.n_dec))
+        self.W_e = Parameter(torch.Tensor(self.num_labels, self.n_enc))
+        self.b = Parameter(torch.Tensor(self.num_labels, 1, 1))
+        if self.biaffine:
+            self.U = Parameter(torch.Tensor(self.num_labels, self.n_dec, self.n_enc))
+        else:
+            self.register_parameter('U', None)
+
+        self.reset_parameters()
+
+    def reset_parameters(self):
+        nn.init.xavier_uniform_(self.W_d)
+        nn.init.xavier_uniform_(self.W_e)
+        nn.init.constant_(self.b, 0.)
+        if self.biaffine:
+            nn.init.xavier_uniform_(self.U)
+
+    def forward(self, input_d, input_e, mask_d=None, mask_e=None):
+        """
+        Args:
+            input_d: Tensor
+                the decoder input tensor with shape = [batch, length_decoder, input_size]
+            input_e: Tensor
+                the child input tensor with shape = [batch, length_encoder, input_size]
+            mask_d: Tensor or None
+                the mask tensor for decoder with shape = [batch, length_decoder]
+            mask_e: Tensor or None
+                the mask tensor for encoder with shape = [batch, length_encoder]
+        Returns: Tensor
+            the energy tensor with shape = [batch, num_label, length, length]
+        """
+        assert input_d.size(0) == input_e.size(0), 'batch sizes of encoder and decoder are requires to be equal.'
+        batch, length_decoder, _ = input_d.size()
+        _, length_encoder, _ = input_e.size()
+
+        # compute decoder part: [num_label, input_size_decoder] * [batch, input_size_decoder, length_decoder]
+        # the output shape is [batch, num_label, length_decoder]
+        out_d = torch.matmul(self.W_d, input_d.transpose(1, 2)).unsqueeze(3)
+        # compute decoder part: [num_label, input_size_encoder] * [batch, input_size_encoder, length_encoder]
+        # the output shape is [batch, num_label, length_encoder]
+        out_e = torch.matmul(self.W_e, input_e.transpose(1, 2)).unsqueeze(2)
+
+        # output shape [batch, num_label, length_decoder, length_encoder]
+        if self.biaffine:
+            # compute bi-affine part
+            # [batch, 1, length_decoder, input_size_decoder] * [num_labels, input_size_decoder, input_size_encoder]
+            # output shape [batch, num_label, length_decoder, input_size_encoder]
+            output = torch.matmul(input_d.unsqueeze(1), self.U)
+            # [batch, num_label, length_decoder, input_size_encoder] * [batch, 1, input_size_encoder, length_encoder]
+            # output shape [batch, num_label, length_decoder, length_encoder]
+            output = torch.matmul(output, input_e.unsqueeze(1).transpose(2, 3))
+
+            output = output + out_d + out_e + self.b
+        else:
+            output = out_d + out_d + self.b
+
+        if mask_d is not None:
+            output = output * mask_d.unsqueeze(1).unsqueeze(3) * mask_e.unsqueeze(1).unsqueeze(2)
+
+        return output
+
+
+class Transpose(nn.Module):
+    def __init__(self, x, y):
+        super(Transpose, self).__init__()
+        self.x = x
+        self.y = y
+
+    def forward(self, x):
+        return x.transpose(self.x, self.y)
+
+
+class WordDropout(nn.Module):
+    def __init__(self, dropout_rate, drop_to_token):
+        super(WordDropout, self).__init__()
+        self.dropout_rate = dropout_rate
+        self.drop_to_token = drop_to_token
+
+    def forward(self, word_idx):
+        if not self.training:
+            return word_idx
+        drop_mask = torch.rand(word_idx.shape) < self.dropout_rate
+        if word_idx.device.type == 'cuda':
+            drop_mask = drop_mask.cuda()
+        drop_mask = drop_mask.long()
+        output = drop_mask * self.drop_to_token + (1 - drop_mask) * word_idx
+        return output
+
+
+class WlossLayer(torch.nn.Module):
+    def __init__(self, lam=100, sinkhorn_iter=50):
+        super(WlossLayer, self).__init__()
+
+        # cost = matrix M = distance matrix
+        # lam = lambda of type float > 0
+        # sinkhorn_iter > 0
+        # diagonal cost should be 0
+        self.lam = lam
+        self.sinkhorn_iter = sinkhorn_iter
+        # self.register_buffer("K", torch.exp(-self.cost / self.lam).double())
+        # self.register_buffer("KM", (self.cost * self.K).double())
+
+    def forward(self, pred, target, cost):
+        return WassersteinLossStab.apply(pred, target,
+                                         cost, self.lam, self.sinkhorn_iter)
+
+
+class WassersteinLossStab(Function):
+    @staticmethod
+    def forward(ctx, pred, target, cost, lam=1e-3, sinkhorn_iter=4):
+        """pred: Batch * K: K = # mass points
+           target: Batch * L: L = # mass points"""
+        # import pdb
+        # pdb.set_trace()
+        eps = 1e-8
+
+        # pred = pred.gather(dim=1, index=)
+        na = pred.size(1)
+        nb = target.size(1)
+
+        cost = cost.double()
+        pred = pred.double()
+        target = target.double()
+
+        cost = cost[:na, :nb].double()
+        K = torch.exp(-cost / lam).double()
+        KM = (cost * K).double()
+
+        batch_size = pred.size(0)
+
+        # pdb.set_trace()
+        log_a, log_b = torch.log(pred + eps), torch.log(target + eps)
+        log_u = cost.new(batch_size, na).fill_(-numpy.log(na))
+        log_v = cost.new(batch_size, nb).fill_(-numpy.log(nb))
+        # import pdb
+        # pdb.set_trace()
+        for i in range(int(sinkhorn_iter)):
+            log_u_max = torch.max(log_u, dim=1)[0]
+            u_stab = torch.exp(log_u - log_u_max.unsqueeze(1) + eps)
+            log_v = log_b - torch.log(torch.mm(K.t(), u_stab.t()).t()) - log_u_max.unsqueeze(1)
+            log_v_max = torch.max(log_v, dim=1)[0]
+            v_stab = torch.exp(log_v - log_v_max.unsqueeze(1))
+            tmp = log_u
+            log_u = log_a - torch.log(torch.mm(K, v_stab.t()).t() + eps) - log_v_max.unsqueeze(1)
+            # print(log_u.sum())
+            if torch.norm(tmp - log_u) / torch.norm(log_u) < eps:
+                break
+
+        log_v_max = torch.max(log_v, dim=1)[0]
+        v_stab = torch.exp(log_v - log_v_max.unsqueeze(1))
+        logcostpart1 = torch.log(torch.mm(KM, v_stab.t()).t() + eps) + log_v_max.unsqueeze(1)
+        wnorm = torch.exp(log_u + logcostpart1).mean(0).sum()  # sum(1) for per item pair loss...
+        grad_input = log_u * lam
+        # print("log_u", log_u)
+        grad_input = grad_input - torch.mean(grad_input, dim=1).unsqueeze(1)
+        grad_input = grad_input - torch.mean(grad_input, dim=1).unsqueeze(1)
+        grad_input = grad_input / batch_size
+
+        ctx.save_for_backward(grad_input)
+        # print("grad type", type(grad_input))
+
+        return pred.new((wnorm,)), grad_input
+
+    @staticmethod
+    def backward(ctx, grad_output, _):
+        grad_input = ctx.saved_variables
+        # print(grad)
+        res = grad_output.clone()
+        res.data.resize_(grad_input[0].size()).copy_(grad_input[0].data)
+        res = res.mul_(grad_output[0]).float()
+        # print("in backward func:\n\n", res)
+        return res, None, None, None, None, None, None
+
+
+class Sinkhorn(Function):
+    def __init__(self):
+        super(Sinkhorn, self).__init__()
+
+    def forward(ctx, a, b, M, reg, tau, warmstart, numItermax, stop):
+        a = a.double()
+        b = b.double()
+        M = M.double()
+
+        nbb = b.size(1)
+
+        # init data
+        na = len(a)
+        nb = len(b)
+
+        cpt = 0
+
+        # we assume that no distances are null except those of the diagonal of
+        # distances
+        if warmstart is None:
+            alpha, beta = np.zeros(na), np.zeros(nb)
+        else:
+            alpha, beta = warmstart
+
+        if nbb:
+            u, v = np.ones((na, nbb)) / na, np.ones((nb, nbb)) / nb
+        else:
+            u, v = np.ones(na) / na, np.ones(nb) / nb
+
+        def get_K(alpha, beta):
+            """log space computation"""
+            return np.exp(-(M - alpha.reshape((na, 1)) - beta.reshape((1, nb))) / reg)
+
+        def get_Gamma(alpha, beta, u, v):
+            """log space gamma computation"""
+            return np.exp(
+                -(M - alpha.reshape((na, 1)) - beta.reshape((1, nb))) / reg + np.log(u.reshape((na, 1))) + np.log(
+                    v.reshape((1, nb))))
+
+        # print(np.min(K))
+
+        K = get_K(alpha, beta)
+        transp = K
+        cpt = 0
+        err = 1
+        while 1:
+
+            uprev = u
+            vprev = v
+
+            # sinkhorn update
+            v = b / (np.dot(K.T, u) + 1e-16)
+            u = a / (np.dot(K, v) + 1e-16)
+
+            # remove numerical problems and store them in K
+            if np.abs(u).max() > tau or np.abs(v).max() > tau:
+                if nbb:
+                    alpha, beta = alpha + reg * \
+                                  np.max(np.log(u), 1), beta + reg * np.max(np.log(v))
+                else:
+                    alpha, beta = alpha + reg * np.log(u), beta + reg * np.log(v)
+                    if nbb:
+                        u, v = np.ones((na, nbb)) / na, np.ones((nb, nbb)) / nb
+                    else:
+                        u, v = np.ones(na) / na, np.ones(nb) / nb
+                K = get_K(alpha, beta)
+
+            if cpt % print_period == 0:
+                # we can speed up the process by checking for the error only all
+                # the 10th iterations
+                if nbb:
+                    err = np.sum((u - uprev) ** 2) / np.sum((u) ** 2) + \
+                          np.sum((v - vprev) ** 2) / np.sum((v) ** 2)
+                else:
+                    transp = get_Gamma(alpha, beta, u, v)
+                    err = np.linalg.norm((np.sum(transp, axis=0) - b)) ** 2
+                if log:
+                    log['err'].append(err)
+
+                if verbose:
+                    if cpt % (print_period * 20) == 0:
+                        print(
+                            '{:5s}|{:12s}'.format('It.', 'Err') + '\n' + '-' * 19)
+                    print('{:5d}|{:8e}|'.format(cpt, err))
+
+            if err <= stopThr:
+                loop = False
+
+            if cpt >= numItermax:
+                loop = False
+
+            if np.any(np.isnan(u)) or np.any(np.isnan(v)):
+                # we have reached the machine precision
+                # come back to previous solution and quit loop
+                print('Warning: numerical errors at iteration', cpt)
+                u = uprev
+                v = vprev
+                break
+
+            cpt = cpt + 1
+
+        # print('err=',err,' cpt=',cpt)
+        if log:
+            log['logu'] = alpha / reg + np.log(u)
+            log['logv'] = beta / reg + np.log(v)
+            log['alpha'] = alpha + reg * np.log(u)
+            log['beta'] = beta + reg * np.log(v)
+            log['warmstart'] = (log['alpha'], log['beta'])
+            if nbb:
+                res = np.zeros((nbb))
+                for i in range(nbb):
+                    res[i] = np.sum(get_Gamma(alpha, beta, u[:, i], v[:, i]) * M)
+                return res, log
+
+            else:
+                return get_Gamma(alpha, beta, u, v), log
+        else:
+            if nbb:
+                res = np.zeros((nbb))
+                for i in range(nbb):
+                    res[i] = np.sum(get_Gamma(alpha, beta, u[:, i], v[:, i]) * M)
+                return res
+            else:
+                return get_Gamma(alpha, beta, u, v)
+
+
+if __name__ == "__main__":
+    cost = (torch.Tensor(2, 2).fill_(1) - torch.diag(torch.Tensor(2).fill_(1)))  # .cuda()
+    mylayer = WlossLayer(cost)  # .cuda()
+    inp = Variable(torch.Tensor([[1, 0], [0.5, 0.5]]), requires_grad=True)  # .cuda()
+    ground_true = Variable(torch.Tensor([[0, 1], [0.5, 0.5]]))  # .cuda()
+
+    res, _ = mylayer(inp, ground_true)
+    # print(inp.requires_grad, res.requires_grad)
+    # print(res, inp)
+    mylayer.zero_grad()
+    res.backward()
+    print("inp's gradient is good:")
+    print(inp.grad)
+
+    print("convert to gpu:\n", inp.cuda().grad)
+    print("=============================================="
+          "\n However, this does not work on pytorch when GPU is enabled")
+
+    cost = (torch.Tensor(2, 2).fill_(1) - torch.diag(torch.Tensor(2).fill_(1))).cuda()
+    mylayer = WlossLayer(cost).cuda()
+    inp = Variable(torch.Tensor([[1, 0], [0.5, 0.5]]), requires_grad=True).cuda()
+    ground_true = Variable(torch.Tensor([[0, 1], [0.5, 0.5]])).cuda()
+
+    opt = optim.SGD([
+        {'params': mylayer.parameters()},
+    ], lr=1e-2, momentum=0.9)
+
+    res, _ = mylayer(inp, ground_true)
+    # print(inp.requires_grad, res.requires_grad)
+    # print(res, inp)
+    mylayer.zero_grad()
+    res.backward()
+    print("input's gradient is None!!!!!!!!!!!!!!!!")
+    print(inp.grad)

fastNLP/modules/utils.py

@@ -1,6 +1,3 @@
-import torch
-
-
 def mask_softmax(matrix, mask):
     if mask is None:
         result = torch.nn.functional.softmax(matrix, dim=-1)
@@ -13,3 +10,231 @@ def seq_mask(seq_len, max_len):
     mask = [torch.ge(torch.LongTensor(seq_len), i + 1) for i in range(max_len)]
     mask = torch.stack(mask, 1)
     return mask
+
+
+"""
+    Codes from FudanParser. Not tested. Do not use !!!
+"""
+from collections import defaultdict
+
+import numpy as np
+import torch
+
+
+def expand_gt(gt):
+    """expand_gt: Expand ground truth to matrix
+    Arguments:
+        gt: tensor of (n, l)
+    Return:
+        f: ground truth matrix of (n, l), $gt[i][j] = k$ leads to $f[i][j][k] = 1$.
+    """
+    n, l = gt.shape
+    ret = torch.zeros(n, l, l).long()
+    for i in range(n):
+        ret[i][torch.arange(l).long(), gt[i]] = 1
+    return ret
+
+
+def greedy_decoding(arc_f):
+    """greedy_decoding
+    Arguments:
+        arc_f: a tensor in shape of (n, l+1, l+1)
+               length of the sentence is l and index 0 is <root>
+    Output:
+        arc_pred: a tensor in shape of (n, l), indicating the head words
+    """
+
+    f_arc = arc_f[:, 1:, :]  # ignore the root
+    _, arc_pred = torch.max(f_arc.data, dim=-1, keepdim=False)
+    return arc_pred
+
+
+def mst_decoding(arc_f):
+    batch_size = arc_f.shape[0]
+    length = arc_f.shape[1]
+    arc_score = arc_f.data.cpu()
+    pred_collection = []
+    for i in range(batch_size):
+        head = mst(arc_score[i].numpy())
+        pred_collection.append(head[1:].reshape((1, length - 1)))
+    arc_pred = torch.LongTensor(np.concatenate(pred_collection, axis=0)).type_as(arc_f).long()
+    return arc_pred
+
+
+def outer_product(features):
+    """InterProduct: Get inter sequence product of features
+    Arguments:
+        features: feature vectors of sequence in the shape of (n, l, h)
+    Return:
+        f: product result in (n, l, l, h) shape
+    """
+    n, l, c = features.shape
+    features = features.contiguous()
+    x = features.view(n, l, 1, c)
+    x = x.expand(n, l, l, c)
+    y = features.view(n, 1, l, c).contiguous()
+    y = y.expand(n, l, l, c)
+    return x * y
+
+
+def outer_concat(features):
+    """InterProduct: Get inter sequence concatenation of features
+    Arguments:
+        features: feature vectors of sequence in the shape of (n, l, h)
+    Return:
+        f: product result in (n, l, l, h) shape
+    """
+    n, l, c = features.shape
+    x = features.contiguous().view(n, l, 1, c)
+    x = x.expand(n, l, l, c)
+    y = features.view(n, 1, l, c)
+    y = y.expand(n, l, l, c)
+    return torch.cat((x, y), dim=3)
+
+
+def mst(scores):
+    """
+    https://github.com/tdozat/Parser/blob/0739216129cd39d69997d28cbc4133b360ea3934/lib/models/nn.py#L692  # NOQA
+    """
+    length = scores.shape[0]
+    min_score = scores.min() - 1
+    eye = np.eye(length)
+    scores = scores * (1 - eye) + min_score * eye
+    heads = np.argmax(scores, axis=1)
+    heads[0] = 0
+    tokens = np.arange(1, length)
+    roots = np.where(heads[tokens] == 0)[0] + 1
+    if len(roots) < 1:
+        root_scores = scores[tokens, 0]
+        head_scores = scores[tokens, heads[tokens]]
+        new_root = tokens[np.argmax(root_scores / head_scores)]
+        heads[new_root] = 0
+    elif len(roots) > 1:
+        root_scores = scores[roots, 0]
+        scores[roots, 0] = 0
+        new_heads = np.argmax(scores[roots][:, tokens], axis=1) + 1
+        new_root = roots[np.argmin(
+            scores[roots, new_heads] / root_scores)]
+        heads[roots] = new_heads
+        heads[new_root] = 0
+
+    edges = defaultdict(set)
+    vertices = set((0,))
+    for dep, head in enumerate(heads[tokens]):
+        vertices.add(dep + 1)
+        edges[head].add(dep + 1)
+    for cycle in _find_cycle(vertices, edges):
+        dependents = set()
+        to_visit = set(cycle)
+        while len(to_visit) > 0:
+            node = to_visit.pop()
+            if node not in dependents:
+                dependents.add(node)
+                to_visit.update(edges[node])
+        cycle = np.array(list(cycle))
+        old_heads = heads[cycle]
+        old_scores = scores[cycle, old_heads]
+        non_heads = np.array(list(dependents))
+        scores[np.repeat(cycle, len(non_heads)),
+               np.repeat([non_heads], len(cycle), axis=0).flatten()] = min_score
+        new_heads = np.argmax(scores[cycle][:, tokens], axis=1) + 1
+        new_scores = scores[cycle, new_heads] / old_scores
+        change = np.argmax(new_scores)
+        changed_cycle = cycle[change]
+        old_head = old_heads[change]
+        new_head = new_heads[change]
+        heads[changed_cycle] = new_head
+        edges[new_head].add(changed_cycle)
+        edges[old_head].remove(changed_cycle)
+
+    return heads
+
+
+def _find_cycle(vertices, edges):
+    """
+    https://en.wikipedia.org/wiki/Tarjan%27s_strongly_connected_components_algorithm  # NOQA
+    https://github.com/tdozat/Parser/blob/0739216129cd39d69997d28cbc4133b360ea3934/lib/etc/tarjan.py  # NOQA
+    """
+    _index = 0
+    _stack = []
+    _indices = {}
+    _lowlinks = {}
+    _onstack = defaultdict(lambda: False)
+    _SCCs = []
+
+    def _strongconnect(v):
+        nonlocal _index
+        _indices[v] = _index
+        _lowlinks[v] = _index
+        _index += 1
+        _stack.append(v)
+        _onstack[v] = True
+
+        for w in edges[v]:
+            if w not in _indices:
+                _strongconnect(w)
+                _lowlinks[v] = min(_lowlinks[v], _lowlinks[w])
+            elif _onstack[w]:
+                _lowlinks[v] = min(_lowlinks[v], _indices[w])
+
+        if _lowlinks[v] == _indices[v]:
+            SCC = set()
+            while True:
+                w = _stack.pop()
+                _onstack[w] = False
+                SCC.add(w)
+                if not (w != v):
+                    break
+            _SCCs.append(SCC)
+
+    for v in vertices:
+        if v not in _indices:
+            _strongconnect(v)
+
+    return [SCC for SCC in _SCCs if len(SCC) > 1]
+
+
+# https://github.com/alykhantejani/nninit/blob/master/nninit.py
+def orthogonal(tensor, gain=1):
+    """Fills the input Tensor or Variable with a (semi) orthogonal matrix. The input tensor must have at least 2 dimensions,
+       and for tensors with more than 2 dimensions the trailing dimensions are flattened. viewed as 2D representation with
+       rows equal to the first dimension and columns equal to the product of  as a sparse matrix, where the non-zero elements
+       will be drawn from a normal distribution with mean=0 and std=`std`.
+       Reference: "Exact solutions to the nonlinear dynamics of learning in deep linear neural networks" - Saxe, A. et al.
+    Args:
+        tensor: a n-dimension torch.Tensor, where n >= 2
+        gain: optional gain to be applied
+    Examples:
+        >>> w = torch.Tensor(3, 5)
+        >>> nninit.orthogonal(w)
+    """
+    if tensor.ndimension() < 2:
+        raise ValueError("Only tensors with 2 or more dimensions are supported.")
+
+    flattened_shape = (tensor.size(0), int(np.prod(tensor.detach().numpy().shape[1:])))
+    flattened = torch.Tensor(flattened_shape[0], flattened_shape[1]).normal_(0, 1)
+
+    u, s, v = np.linalg.svd(flattened.numpy(), full_matrices=False)
+    if u.shape == flattened.detach().numpy().shape:
+        tensor.view_as(flattened).copy_(torch.from_numpy(u))
+    else:
+        tensor.view_as(flattened).copy_(torch.from_numpy(v))
+
+    tensor.mul_(gain)
+    with torch.no_grad():
+        return tensor
+
+
+def generate_step_dropout(masks, hidden_dim, step_dropout, training=False):
+    # assume batch first
+    # import pdb
+    # pdb.set_trace()
+
+    batch, length = masks.size()
+    if not training:
+        return torch.ones(batch, length, hidden_dim).fill_(1 - step_dropout).cuda(masks.device) * masks.view(batch,
+                                                                                                             length, 1)
+    masked = torch.zeros(batch, 1, hidden_dim).fill_(step_dropout)
+    masked = torch.bernoulli(masked).repeat(1, length, 1)
+    masked = masked.cuda(masks.device) * masks.view(batch, length, 1)
+    return masked

fastNLP/saver/base_saver.py

@@ -3,12 +3,3 @@ class BaseSaver(object):
 
     def __init__(self, save_path):
         self.save_path = save_path
-
-    def save_bytes(self):
-        raise NotImplementedError
-
-    def save_str(self):
-        raise NotImplementedError
-
-    def compress(self):
-        raise NotImplementedError

fastNLP/saver/model_saver.py

@@ -1,4 +1,6 @@
-from saver.base_saver import BaseSaver
+import torch
+
+from fastNLP.saver.base_saver import BaseSaver
 
 
 class ModelSaver(BaseSaver):
@@ -6,3 +8,11 @@ class ModelSaver(BaseSaver):
 
     def __init__(self, save_path):
         super(ModelSaver, self).__init__(save_path)
+
+    def save_pytorch(self, model):
+        """
+        Save a pytorch model into .pkl file.
+        :param model: a PyTorch model
+        :return:
+        """
+        torch.save(model.state_dict(), self.save_path)

test/data_for_tests/config

@@ -57,4 +57,13 @@ new_attr = 40
 epochs = 20
 batch_size = 1
 pickle_path = "./data_for_tests/"
-validate = true
+validate = true
+
+[POS_test]
+save_output = true
+validate_in_training = false
+save_dev_input = false
+save_loss = true
+batch_size = 1
+pickle_path = "./data_for_tests/"
+

test/test_POS_pipeline.py

@@ -1,11 +1,13 @@
 import sys
-
 sys.path.append("..")
 
 from fastNLP.loader.config_loader import ConfigLoader, ConfigSection
 from fastNLP.action.trainer import POSTrainer
 from fastNLP.loader.dataset_loader import POSDatasetLoader
 from fastNLP.loader.preprocess import POSPreprocess
+from fastNLP.saver.model_saver import ModelSaver
+from fastNLP.loader.model_loader import ModelLoader
+from fastNLP.action.tester import POSTester
 from fastNLP.models.sequence_modeling import SeqLabeling
 
 data_name = "people.txt"
@@ -17,8 +19,8 @@ if __name__ == "__main__":
     ConfigLoader("config.cfg", "").load_config("./data_for_tests/config", {"POS": train_args})
 
     # Data Loader
-    pos = POSDatasetLoader(data_name, data_path)
-    train_data = pos.load_lines()
+    pos_loader = POSDatasetLoader(data_name, data_path)
+    train_data = pos_loader.load_lines()
 
     # Preprocessor
     p = POSPreprocess(train_data, pickle_path)
@@ -37,3 +39,22 @@ if __name__ == "__main__":
     trainer.train(model)
 
     print("Training finished!")
+
+    saver = ModelSaver("./saved_model.pkl")
+    saver.save_pytorch(model)
+    print("Model saved!")
+
+    del model, trainer, pos_loader
+
+    model = SeqLabeling(100, 1, num_classes, vocab_size, bi_direction=True)
+    ModelLoader("xxx", "./saved_model.pkl").load_pytorch(model)
+    print("model loaded!")
+
+    test_args = ConfigSection()
+    ConfigLoader("config.cfg", "").load_config("./data_for_tests/config", {"POS_test": test_args})
+
+    #test_args = {"save_output": True, "validate_in_training": False, "save_dev_input": False,
+    #             "save_loss": True, "batch_size": 1, "pickle_path": pickle_path}
+    tester = POSTester(test_args)
+    tester.test(model)
+    print("model tested!")